#NEXUS BEGIN DATA; DIMENSIONS NTAX=23 NCHAR=[593]602; FORMAT [DATATYPE=DNA] symbols = "A C G T - 0 1 2 3 4 5 6 7 8 9 B D E F" MISSING=? [GAP=- ] INTERLEAVE; MATRIX [ 1 2 3 4 5 ] [ 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 ] [ 12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123] Almbornia_azaniensisAY340874 ??????????????????????????????????????????????????????????????????????????????????????????????????????????TTGCTTTGGCGGACCCGAGGATCCTCTCGCGTCAGCTCTTGGGTCGGCGAGCGCCCGTCAGAGGCCTATTTC-ATTCT-TTCTTT-AGTGAAGTCTGAGTCCAAAAATACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCACATTGCGCCCCTCGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACAGCTTGGTATTGGGACTTCGCCCC-GCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTGAGCGTAGTAAAA-TCTTCCCGCTCTGAAGTTCCCGTCGCGGCCGGCCAGAGAACCC-ATTTGCTTCTATA?????????????????????????????????????????????????????????? [585] USAxahy287 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGTCGGCGAGTGTCCGTCAGAGGCCCATTTAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAACAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAATA-TTTTCCCGCTCTAGAGTACCCG-CGTGGCCGGCCAAAGAACCCCATTTACTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [582] USAxahy288 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGTCGGCGAGTGTCCGTCAGAGGCCCATTTAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAATA-TTTTCCCGCTCTAGAGTACCCG-CGTGGCCGGCCAAAGAACCCCATTTACTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [582] USAxahy289 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGTCGGCGAGTGTCCGTCAGAGGCCCATTTAAATTCTATTCATT-AGAAACGTCCGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAATA-TTTTCCCGCTCTAGAGTACCCG-CGTGGCCGGCCAAAGAACCCCATTTACTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [582] USAxahy290 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGTCGGCGAGTGTCCGTCAGAGGCCCATTTAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCTGCGTGACTTTAAGCGTAGTAATA-TTTTCCCGCTCCAGAGTACCCG-CGTGGCCGGCCAAAGAACCCCATTTACTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [582] USAxahy291 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGTCGGCGAGTGTCCGTCAGAGGCCCATTTAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAACAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAATA-TTTTCCCGCTCTAGAGTACCCG-CGTGGCCGGCCAAAGAACCCCATTTACTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [582] USAxaliEF591823 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCCTAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAGACCTCTCGCGCCGACTCTTCGGCCGGCGAGTGTCCGTCAGAGGCCCATTCAAATCCTATTCATT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGTGGCGTGCCCGAAAAGCAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATTCTCC-CGCTCTAAAGTACTCGCCGTG?CCGGCCAAAGAACCTCG?????????????????????????????????????????????????????????????????????? [587] USAxaliEF591822 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCCTAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAGACCTCTCGCGCCGACTCTTCGGCCGGCGAGTGTCCGTCAGAGGCCCATTCAAATCCTATTCGTT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGTGGCGTGCCCGAAAAGCAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATTTCTCCCGCTCTAAAGTACTCGCCGTGGCCGGCCAAAGAACCTCGTTTACTTTTATAA????????????????????????????????????????????????????????? [588] USAxavi293 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGCCGGCGAGTGTCCGTCAGAGACCCATTTA-ATTCTATTCATT-AGAGACGTCGGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGTGTGACTTTAAGCGTAGTAATG-TCTTCCCGCTCTGGAGTACTCGCCGTGGCCGGCCAAAGAACCCCATTCATTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [583] USAxavi294 TTTCCG-TA-GGTGAACCTG-CGGAAGGATCATTACCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCC-TAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAGTCCTCTCGCGCCGACTCTTCGGCCGGCGAGTGTCCGTCAGAGACCCATTTA-ATTCTATTCATT-AGAGACGTCGGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGTGTGACTTTAAGCGTAGTAATG-TCTTCCCGCTCTGGAGTACTCGCCGTGGCCGGCCAAAGAACCCCATTCATTTTTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA??????????????????? [583] EURxaconAF451748 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCCTAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGACCTCTCGCGTCGACT-------CGGCGAGTGTCCGTCAGAGGCCCATTCAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCG?AGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAGCAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCCTCC-CGCTCTAGAGTACTCGCCGTGGCCGGCCAAAGAACCCCATTTACTTCGA???????????????????????????????????????????????????????????? [580] UNKxaconAF117997 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCCTAACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGACGGGCCCGAGAGACCTCTCGCGTCGACT-------CGGCGAGTGTCCGTCAGAGGCCCATTCAAATTCTATTCATT-AGAGACGTCTGAGTTCC--AATACAATAAGTAAAAACTTTCACACAACGGATCTCTTGGTTCCAG?ATCGA-TGAAG?ACGCAG?GA?ATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTGTTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAGCAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCCTCC-CGCTCTAGAGTACTCGCCGTGGCCGGCCAAAGAACCCCATTTACTTCTATAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA?CATATC?GTAA?CGAG?A [581] AUSxaneEF591821 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCTTTGCGTATCTACCTT?GTTGCTTTGGCGGACCCGAGGAACGTCTCGCTCCGGCTCTTAGGTCGGTGAGCGTCCGCCGGAGGCCCATTTA-ATTCTACTTATT-CGTGATGTCCGAGTCCA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTC-GGCGTGACTTTAAGCGTAGTAACATCTTCC-CGCTCTAGAGCACTCGCCGAGACCGACCAAACAACCCCATTTACTTCTATAA????????????????????????????????????????????????????????? [584] AUSxaneEF591818 ???????????????????????????????????CCGAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCTTTGCGTATCTACCTTT?TTGCTTTGGCGGACCCGAGGAACGTCTCGCTCCGGCTCTTAGGTCGGTGAGCGTCCGCCGGAGGCCCATTTA-ATTCTACTTATT-CGTGATGTCCGAGTCCA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCG-CGTGACTTTAAGCGTAGTAACATCTTCCC-GCTCTAGAGCACTCGCCGAGACCGACCAAACAACCCCATTTACTTCTATAA????????????????????????????????????????????????????????? [584] AUSxataDQ167463 ???????????????????????????????????CCGAGAGAGGGGCTCCGTGCTCCCGGGGGCTTCGGCCCCC-AACTCTTCACCCTTTGCGTACCTACCTTTGTTGCTTTGGCGGACCCGAGAACCTCCTCGCCCCGGCTCCTAGGTCGGTGAGCGTCCGTCAGAGGCCCATTCA-ATTCTACTTATT-CGTGATGTCCGAGTCTA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGTAGCTTGGTATTGGGCCCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTCAAGCGTAGTAATATCTCCCC-GCTCTAGAGTACTCGGCGTGACCGACCCAATAACCCCATTTACTTCTATAA????????????????????????????????????????????????????????? [585] AUSxataDQ167464 ???????????????????????????????????CCGAGAGAGGGGCTCCGTGCTCCCGGGGGTTCCGGCCCCC-AACTCTTCACCCTTTGCGTATCTACCTTTGTTGCTTTGGCGGACCCGAGAACCTCCTCGCTCTGGCTCCTAAGTCGGTGAGTGTCCGTCAGAGGCCCACTTA-ATTCTACTTATT-CGTGATGTCCGAGTCCA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCTCTCGCCCCCGCGGCGTGCCCGAAAAACAGTGGCGGCCCGGCGTGACTTTAAGCGTAGTAACATCTTCCC-GCTCGAGAGTACTCGGCGTGACAGACCCAACAACCCCATTTACTT??ATAA????????????????????????????????????????????????????????? [585] EURxemoAY581100 ????????????????????????????ATCATTACTGAGAGAGGGGCTTCGTGCTCCCGGGG-TTTCGGCCCC--AACTCTTCACCCTATGCGTACCTACCTTTGTTGCTTTGGCGGACCCGAGAATTCTCTCGCGCTGGCTCTTGGGCCGGCGAGCGTCCGTCAGAGGTC-ATTTA-ATTCTGTTTAAC-CACGACGTCCGAGTTTAA-AACAAAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCTCTCGTCCCCGTGACGTGCCCGAAAAGCAGTGGCGGTCCGGCCTGACTTCAAGCGTAGTAATATCTTCCC-GCTTCGAAGCGCTCGTCGTGGCCGGCCAGAGAACCCCATTTATTTTCATAA????????????????????????????????????????????????????????? [583] EURxemoAY037006 ??????????????????????????????????A-TGAGAGAGGGGCTTCGTGCTCCCGGGG-TTTCGGCCCC--AACTCTTCACCCTATGCGTACCTACCTTTGTTGCTTTGGCGGACCCGAGAATTCTCTCGCGCTGGCTCTTGGGCCGGCGAGCGTCCGTCAGAGGTC-ATTTA-ATTCTGTTTAAC-CACGACGTCCGAGTTTAA-AACAAAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGCAGCTTGGTATTGGGCTCTCGTCCCCGTGACGTGCCCGAAAAGCAGTGGCGGTCCGGCCTGACTTCAAGCGTAGTAATATCTTCCC-GCTTCGAAGCGCTCGTCGTGGCCGGCCAGAGAACCC-ATTTATTTTCATAA????????????????????????????????????????????????????????? [581] EURneloAF115764 GTTTCCGTA-GGTGAACCTG-CGGAAGGATCATTATTGAGAGAGGGGCCTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCCTTGCCTACCTACCTTTGTTGCTTTGGCGGACCCGAGAATCCTCTCGCGCTGGCTCTTAAGCCGGTGCGCGTTCGTCAGAGGCCCATTTA-ATTCTATTTAATCTATGACGTCCGAGTCTA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGAGTGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCGCAGCTTGGTATTGGGCCTTCGCCCCTGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCTTCCC-GCTTTAAAGCACTCGTTGTGGCCGGCCAGAGAACCT-ATTTATTTCCATAATTGACCTCGGATCAGGTAGGGA-ACCCGCTGAACTTAAGC????????????????? [583] EURneloAY581076 ????????????????????????????ATCATTATTGAGAGAGGGGCCTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCCTTGCCTACCTACCTTTGTTGCTTTGGCGGACCCGGGAATCCTCTCGCGCTGGCTCTTAAGCCGGTGCGCGTCCGTCAGAGGCCCATTTA-ATTCTATTTAATCTATGACGTCCGAGTCTA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCGCAGCTTGGTATTGGGCCTTCGCCCCTGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCTTCCCCGCTTTAAAGCACTCGTTGCGGCCGGCCAGAGAACCT-ATTTATTTCCATAA????????????????????????????????????????????????????????? [586] EURneloAY581070 ????????????????????????????ATCATTATTGAGAGAGGGGCCTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCCTTGCCTACCTACCTTTGTTGCTTTGGCGGACCCGGGAATCCTCTCGCGCTGGCTCTTAAGCCGGTGCGCGTCCGTCAGAGGCCCATTTA-ATTCTATTTAATCTATGACGTCCGAGTCTA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCGCAGCTTGGTATTGGGCCTTCGCCCCTGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCTTCCC-GCTTTAAAGCACTCGTTGTGGCCGGCCAGAGAACCT-TTTTATTTCCATAA????????????????????????????????????????????????????????? [585] EURnepuAY581071 ????????????????????????????ATCATTATTGAGAGAGGGGCCTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCCTTGCCTACCTACCTTTGTTGCTTTGGCGGACCCGGGAATCCTCTCGCGCTGGCTCTTAAGCCGGTGCGCGTCCGTCAGAGGCCCATTTA-ATTCTATTTAATCTATGACGTCCGAGTCTA--AACAGAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCGCAGCTTGGTATTGGGCCTTCGCCCCTGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCTTCCC-GCTTTAAAGCACTCGTTGTGGCCGGCCAGAGAACCT-ATTTATTTCCATAA????????????????????????????????????????????????????????? [585] EURnepuAF451747 ???????????????????????????????????TTGAGAGAGGGGCCTCGTGCTCCCGGGGGTTTCGGCCCCC-AACTCTTCACCCCTTGCCTACCTACCTTTGTTGCTTTGGCGGACCCGGGAATCCTCTCGCGCTGGCTCTTTAGCCGGTGCGCGTCCGTCAGAGGCCCATTTA-ATTCTATTTAATCTATGACGTCCGAGTCTA--AACACAATGAATAAAAACTTTCA-ACAACGGATCTCTTGGTTCCAGCATCGA-TGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCGCAGCTTGGTATTGGGCCTTCGCCCCTGCGGCGTGCCCGAAAAACAGTGGCGGTCCGGCGTGACTTTAAGCGTAGTAACATCTTCCC-GCTTTAAAGCACTCGTTGTGGCCGGCCAGAGAACCT-ATTTATTTCCATAA????????????????????????????????????????????????????????? [585] [ ambiguous region ] [ ] [ 123456789 ] Almbornia_azaniensisAY340874 ?81415204 USAxahy287 1103162B0 USAxahy288 1103162B0 USAxahy289 1103122B0 USAxahy290 110316390 USAxahy291 1103162B0 USAxaliEF591823 300116272 USAxaliEF591822 300116282 USAxavi293 1002142F2 USAxavi294 1002142F2 EURxaconAF451748 390116212 UNKxaconAF117997 390116212 AUSxaneEF591821 230220021 AUSxaneEF591818 230220141 AUSxataDQ167463 2200212D3 AUSxataDQ167464 240220233 EURxemoAY581100 0622032E5 EURxemoAY037006 0622032E5 EURneloAF115764 250231257 EURneloAY581076 250231266 EURneloAY581070 250231257 EURnepuAY581071 250231257 EURnepuAF451747 270231257 ; END; BEGIN ASSUMPTIONS; USERTYPE ITS1 STEPMATRIX = 5 A C G T - [A] . 2.47 1.44 2.29 4.08 [C] 2.47 . 2.69 0.90 5.08 [G] 1.44 2.69 . 2.98 3.38 [T] 2.29 0.90 2.98 . 5.08 [-] 4.08 5.08 3.38 5.08 . ; USERTYPE 58S STEPMATRIX = 5 A C G T - [A] . 2.61 1.61 2.61 2.61 [C] 2.61 . 2.61 0.92 1.61 [G] 1.61 2.61 . 2.61 1.61 [T] 2.61 0.92 2.61 . 2.61 [-] 2.61 1.61 1.61 2.61 . ; USERTYPE ITS2 STEPMATRIX = 5 A C G T - [A] . 2.40 1.19 3.50 4.50 [C] 2.40 . 2.80 0.93 3.50 [G] 1.19 2.80 . 2.80 4.50 [T] 3.50 0.93 2.80 . 3.50 [-] 4.50 3.50 4.50 3.50 . ; USERTYPE Region#1 STEPMATRIX = 4 [ 0 = CCCC--AACT] [ 1 = CCCC-TAACT] [ 2 = CCCCC-AACT] [ 3 = CCCCCTAACT] 0 1 2 3 [0] . 3.0 3.0 3.0 [1] 3.0 . 1.0 3.0 [2] 3.0 1.0 . 3.0 [3] 3.0 3.0 3.0 . ; USERTYPE Region#2 STEPMATRIX = 10 [ 0 = CCGACTCTTCGGC] [ 1 = CCGACTCTTCGGT] [ 2 = CCGGCTCCTAGGT] [ 3 = CCGGCTCTTAGGT] [ 4 = CTGGCTCCTAAGT] [ 5 = CTGGCTCTTAAGC] [ 6 = CTGGCTCTTGGGC] [ 7 = CTGGCTCTTTAGC] [ 8 = TCAGCTCTTGGGT] [ 9 = TCGACT-------] 0 1 2 3 4 5 6 7 8 9 [0] . 1.0 5.0 4.0 7.0 5.0 4.0 4.0 6.0 4.0 [1] 1.0 . 4.0 3.0 6.0 6.0 5.0 5.0 5.0 7.0 [2] 5.0 4.0 . 1.0 2.0 4.0 4.0 6.0 4.0 8.0 [3] 4.0 3.0 1.0 . 3.0 3.0 3.0 5.0 3.0 8.0 [4] 7.0 6.0 2.0 3.0 . 2.0 4.0 4.0 6.0 8.0 [5] 5.0 6.0 4.0 3.0 2.0 . 2.0 2.0 6.0 6.0 [6] 4.0 5.0 4.0 3.0 4.0 2.0 . 3.0 4.0 6.0 [7] 4.0 5.0 6.0 5.0 4.0 2.0 3.0 . 7.0 6.0 [8] 6.0 5.0 4.0 3.0 6.0 6.0 4.0 7.0 . 8.0 [9] 4.0 7.0 8.0 8.0 8.0 6.0 6.0 6.0 8.0 . ; USERTYPE Region#3 STEPMATRIX = 3 [ 0 = CCC] [ 1 = CCT] [ 2 = TC-] 0 1 2 [0] . 1.0 4.0 [1] 1.0 . 4.0 [2] 4.0 4.0 . ; USERTYPE Region#4 STEPMATRIX = 5 [ 0 = CA-] [ 1 = CAA] [ 2 = TA-] [ 3 = TAA] [ 4 = TC-] 0 1 2 3 4 [0] . 3.0 1.0 4.0 3.0 [1] 3.0 . 4.0 1.0 6.0 [2] 1.0 4.0 . 3.0 2.0 [3] 4.0 1.0 3.0 . 5.0 [4] 3.0 6.0 2.0 5.0 . ; USERTYPE Region#5 STEPMATRIX = 4 [ 0 = C-C] [ 1 = T-A] [ 2 = T-C] [ 3 = TCT] 0 1 2 3 [0] . 3.0 1.0 5.0 [1] 3.0 . 2.0 5.0 [2] 1.0 2.0 . 4.0 [3] 5.0 5.0 4.0 . ; USERTYPE Region#6 STEPMATRIX = 7 [ 0 = CGAGTCCA--AACA] [ 1 = CGAGTCTA--AACA] [ 2 = CGAGTTCC--AATA] [ 3 = CGAGTTTAA-AACA] [ 4 = GGAGTTCC--AATA] [ 5 = TGAGTCCAAAAATA] [ 6 = TGAGTTCC--AATA] 0 1 2 3 4 5 6 [0] . 1.0 4.0 5.0 6.0 5.0 5.0 [1] 1.0 . 5.0 4.0 7.0 6.0 6.0 [2] 4.0 5.0 . 7.0 2.0 7.0 1.0 [3] 5.0 4.0 7.0 . 9.0 7.0 8.0 [4] 6.0 7.0 2.0 9.0 . 8.0 2.0 [5] 5.0 6.0 7.0 7.0 8.0 . 6.0 [6] 5.0 6.0 1.0 8.0 2.0 6.0 . ; USERTYPE Region#7 STEPMATRIX = 4 [ 0 = -GG] [ 1 = CG-] [ 2 = CGG] [ 3 = CTG] 0 1 2 3 [0] . 6.0 3.0 5.0 [1] 6.0 . 3.0 5.0 [2] 3.0 3.0 . 2.0 [3] 5.0 5.0 2.0 . ; USERTYPE Region#8 STEPMATRIX = 14 [ 0 = GTAAAA-TCTTCCCGCTCTG] [ 1 = GTAACATCCTCC-CGCTCTA] [ 2 = GTAACATCTTCC-CGCTCTA] [ 3 = GTAACATCTTCCC-GCTCGA] [ 4 = GTAACATCTTCCC-GCTCTA] [ 5 = GTAACATCTTCCC-GCTTTA] [ 6 = GTAACATCTTCCCCGCTTTA] [ 7 = GTAACATTCTCC-CGCTCTA] [ 8 = GTAACATTTCTCCCGCTCTA] [ 9 = GTAATA-TTTTCCCGCTCCA] [ B = GTAATA-TTTTCCCGCTCTA] [ D = GTAATATCTCCCC-GCTCTA] [ E = GTAATATCTTCCC-GCTTCG] [ F = GTAATG-TCTTCCCGCTCTG] 0 1 2 3 4 5 6 7 8 9 B D E F [0] . 4.0 3.0 5.0 3.0 4.0 7.0 10.0 8.0 5.0 4.0 4.0 4.0 3.0 [1] 4.0 . 1.0 3.0 1.0 2.0 5.0 1.0 4.0 8.0 7.0 8.0 5.0 4.0 [2] 3.0 1.0 . 2.0 0.0 1.0 4.0 2.0 6.0 3.0 2.0 2.0 4.0 3.0 [3] 5.0 3.0 2.0 . 2.0 3.0 6.0 4.0 8.0 4.0 4.0 4.0 5.0 5.0 [4] 3.0 1.0 0.0 2.0 . 1.0 4.0 2.0 6.0 3.0 2.0 2.0 4.0 3.0 [5] 4.0 2.0 1.0 3.0 1.0 . 3.0 3.0 7.0 4.0 3.0 3.0 3.0 4.0 [6] 7.0 5.0 4.0 6.0 4.0 3.0 . 6.0 4.0 8.0 7.0 6.0 6.0 7.0 [7] 10.0 1.0 2.0 4.0 2.0 3.0 6.0 . 3.0 3.0 2.0 8.0 6.0 10.0 [8] 8.0 4.0 6.0 8.0 6.0 7.0 4.0 3.0 . 6.0 5.0 6.0 10.0 8.0 [9] 5.0 8.0 3.0 4.0 3.0 4.0 8.0 3.0 6.0 . 1.0 8.0 3.0 4.0 [B] 4.0 7.0 2.0 4.0 2.0 3.0 7.0 2.0 5.0 1.0 . 7.0 4.0 3.0 [D] 4.0 8.0 2.0 4.0 2.0 3.0 6.0 8.0 6.0 8.0 7.0 . 4.0 3.0 [E] 4.0 5.0 4.0 5.0 4.0 3.0 6.0 6.0 10.0 3.0 4.0 4.0 . 3.0 [F] 3.0 4.0 3.0 5.0 3.0 4.0 7.0 10.0 8.0 4.0 3.0 3.0 3.0 . ; USERTYPE Region#9 STEPMATRIX = 8 [ 0 = CG-CGTG] [ 1 = CGCCGAG] [ 2 = CGCCGTG] [ 3 = CGGCGTG] [ 4 = CGTCGCG] [ 5 = CGTCGTG] [ 6 = CGTTGCG] [ 7 = CGTTGTG] 0 1 2 3 4 5 6 7 [0] . 5.0 3.0 3.0 4.0 3.0 5.0 4.0 [1] 5.0 . 2.0 4.0 3.0 3.0 4.0 4.0 [2] 3.0 2.0 . 2.0 2.0 1.0 3.0 2.0 [3] 3.0 4.0 2.0 . 3.0 2.0 4.0 3.0 [4] 4.0 3.0 2.0 3.0 . 1.0 1.0 2.0 [5] 3.0 3.0 1.0 2.0 1.0 . 2.0 1.0 [6] 5.0 4.0 3.0 4.0 1.0 2.0 . 1.0 [7] 4.0 4.0 2.0 3.0 2.0 1.0 1.0 . ; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-36 71-80 138-150 171-173 177-179 191-193 202-215 453-455 472-491 499-505 521-593 constant; TypeSet * ITS = ITS1: 37-225, 58S: 226-374, ITS2: 375-520, Region#1: 594, Region#2: 595, Region#3: 596, Region#4: 597, Region#5: 598, Region#6: 599, Region#7: 600, Region#8: 601, Region#9: 602; END;