#NEXUS BEGIN DATA; DIMENSIONS NTAX=42 NCHAR=[874]879; FORMAT [DATATYPE=DNA]SYMBOLS = "ACGT-0123456789BDEFHJKLMP" MISSING=?[ GAP=-] INTERLEAVE; CHARSTATELABELS 241 I, 242 T, 243 S, 244 1., 245 '[a', 246 b, 247 1c, 248 'd]', 253 '(a', 254 b, 255 c, 258 d, 259 e, 261 2., 263 e, 264 d, 265 c, 266 b, 267 'a)', 272 '(a', 273 b, 274 c, 275 d, 277 e, 278 f, 279 g, 280 ., 281 h, 282 i, 283 j, 284 k, 286 l, 287 ., 289 m, 290 n, 291 o, 292 p, 293 q, 294 r, 295 s, 296 t, 297 ., 298 3., 299 ., 300 ., 301 t, 302 s, 303 r, 304 q, 305 p, 306 o, 307 n, 308 m, 310 ., 311 l, 312 k, 313 j, 314 i, 315 h, 316 ., 317 g, 318 f, 319 e, 320 d, 322 c, 323 b, 324 'a)', 326 ., 327 ., 328 ., 329 ., 330 '[d', 331 1c, 332 b, 333 'a]', 340 '[a', 341 b, 342 4c, 343 d, 344 e, 345 'f]', 362 '[a', 363 b, 364 c, 365 d, 366 e, 367 f, 368 g, 369 h, 370 i, 371 j, 372 'k]', 373 ., 374 ., 375 '(a', 376 b, 377 c, 378 d, 379 e, 380 ., 381 ., 382 ., 383 ., 384 6., 385 ., 386 ., 387 ., 388 ., 389 ., 390 e, 391 d, 392 c, 393 b, 394 'a)', 396 '(a', 397 b, 398 c, 399 d, 400 ., 401 e, 402 f, 403 g, 404 h, 405 ., 406 i, 407 j, 408 k, 409 l, 411 ., 412 ., 413 7., 414 ., 415 ., 416 ., 418 l, 419 k, 420 j, 421 i, 422 ., 423 h, 424 g, 425 f, 426 e, 427 ., 428 d, 429 c, 430 b, 431 'a)', 464 '(a', 465 b, 466 c, 467 d, 468 e, 469 ., 470 f, 471 g, 472 h, 473 i, 474 ., 475 ., 476 8., 477 ., 478 ., 479 ., 480 i, 481 h, 482 g, 483 f, 484 ., 485 ., 488 e, 489 d, 490 c, 491 b, 492 'a)', 494 '[f', 496 4., 497 e, 498 d, 499 c, 500 b, 501 'a]', 510 5., 511 ., 512 8., 513 S, 662 I, 663 T, 664 S, 665 2., 671 '(a', 672 b, 673 c, 674 d, 675 e, 676 f, 677 ., 678 1., 679 ., 680 f, 681 e, 682 d, 683 c, 684 b, 685 'a)', 688 '(a', 689 b, 690 c, 691 d, 692 e, 693 ., 694 ., 695 ., 696 f, 697 g, 698 h, 699 i, 700 j, 701 k, 702 l, 703 m, 704 n, 705 o, 706 p, 707 ., 708 ., 709 ., 711 2., 712 ., 713 ., 714 p, 715 o, 720 n, 721 m, 722 l, 723 k, 724 j, 725 i, 726 h, 727 g, 728 f, 729 ., 730 e, 731 d, 732 c, 733 b, 734 'a)', 742 '(a', 743 b, 744 c, 745 d, 746 e, 747 f, 748 g, 749 h, 750 i, 751 j, 752 k, 753 l, 754 m, 755 ., 756 ., 757 ., 758 n, 759 o, 760 p, 761 q, 762 r, 763 s, 764 t, 765 u, 766 v, 767 ., 768 ., 769 w, 770 x, 771 ., 772 ., 773 ., 774 3., 775 ., 776 ., 777 ., 778 x, 779 w, 780 ., 781 ., 782 v, 783 u, 784 t, 785 s, 786 r, 787 ., 788 ., 789 q, 790 p, 791 o, 792 n, 793 ., 794 ., 795 ., 796 m, 797 l, 798 k, 799 j, 800 ., 801 i, 802 h, 803 g, 805 f, 806 ., 807 e, 808 d, 809 c, 810 b, 811 'a)', ; MATRIX [ 1 2 3 4 5 6 7 8 ] [ 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 ] [ 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234] Cladonia_arbuscula_AF458292 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCGGGG--GCCTAGCCCCCA--GCGG-TGGGTGTCTGT-CCGAGTCC-TTCGGGCTCGG-CCAGCGCTCAT-CGT-GTATCTCAACCCCATGTTTACCT-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CAGCGTTTTTC-GCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-CATTTATTAGTGAAGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCTCTCTT--TGG---GGGGCCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATGGGCCTTGCCAAAA-CACC--ATAAATCTCCATGA??????????????????????????????????????? [842] Cladonia_arbuscula_AF458291 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCAGGG--GCCTAGCCCCCA--GCGG-TGGGTGTCTGT-TCGAGTCC-TCCGGGCTCGG-CCAGCGCTCAT-CGT-GCATCTCAACCCCATGTTTACCT-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGTCCC-CAGCGTTTTCT-GCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TATTTATTAGTGAAGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCGTGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGATGTTCGCGGGCCCTCTT--TAG---GGGGCTTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATGGGCCTTGCCAAAA-CACC--ATAAATCTCCATGA??????????????????????????????????????? [842] Cladonia_arbuscula_AF458293 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCAGGG--GCCTAGCCCCCA--GCGG-TGGGTGTCTGT-TCGAGTCC-TCCGGGCTCGG-CCAGCGCTCAT-CGT-GCATCTCAACCCCATGTTTACCT-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CAGCGTTTTCT-GCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TATTTATTAGTGAAGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTT--CAG---GGGGCTTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATGGGCCTTGCCAAAA-CACC--ATAAATCTCCATGA??????????????????????????????????????? [842] Cladonia_arbuscula_AF458309 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCGGGG--GCCTAGCCCCCA--GCGG-TGGGTGTCTAT-CCGAGTCC-TCCGGGCTCGG-CCAGCGCTCAT-CGT-GCATCTCAACCCCATGTTTACCT-TAC-CTTTGTTGCTTTGGCGGGCCCTGAGTAGGCTATACGGCTCATGCCGGCCCC-CAGCGTTTTCT-GCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATCC-AAA-TTC-TATCTATTAGTGAAGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTT--CAG---GGGGCCTGCGTGTCCGAAAAGCAATGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATGGGCCTTGCCAAAA-CACC--ATAAATCTCCATGA??????????????????????????????????????? [842] Cladonia_subtenuis_AF457911 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTGCGGGG--GCCTAGCCCCCA--GCGG-TGAGTGTCTGT-CCGGGTCCGTCCGGGCTCGG-CCAGCGCTCGT-CGT-GTACCTCAACCCCATGTCTACCT-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CAGCGTTCCCT-GCTG-GGGGGCGGCCCGCGCCCGCCAGAGGTTTATTC-AAA-TCT-GGTTTATCAGTGAAGTCCGAGT--AAATATC--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGCTCGCGGGCCCTCTT--TGG---GGGGCTTGCGGGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAACCGGTGGGCCTGACCAAAA-CCCCCC-TAAATCTCCATGA??????????????????????????????????????? [844] Cladonia_subtenuis_AF457912 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTGCGGGG--GCCTAGCCCCCA--GCGG-TGAGTGTCTGT-CCGGGTCCGTCCGGGCTCGG-CCAGCGCTCGT-CGT-GTACCTCAACCCCATGTCTACCT-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CAGCGTTTCCT-GCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCT-GATTTATCAGTGAAGTCCGAGT--AAATATC--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGCTCGCGGGCCCTCTT--TGG---GGGGCTTGCGGGTCCGAAAAGCAGTGGCGGTCGCCGGGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAACCGGTGGGCCTGACCAAAA-CCCCCC-TAAATCTCCATGA??????????????????????????????????????? [844] Cladonia_floerkeana_AF453697 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTAGGGG--GCCTAGCCCTCA--GCGG-TGGGTGTCTGT-TCATGTCCGTCAGGGCTTGG-ACAGCGCTCGT-CGT-GTATCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CGGCGTCTTCTTGCTG-GGGGGCGGCTCGCGCCCGCCAGAGGTTCAATC-AAA-CTC-TGTTTATTAGTGAAGTCCGAGT--AAAAATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTT--TGGGG--GGGCCCGCGCGCCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAACCGATGGGCCCTGCCAAAA-CCCCCCATAAATCTCCATGA??????????????????????????????????????? [847] Cladonia_floerkeana_AF453698 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTAGGGG--GCCTAGCCCTCA--GCGG-TGGGTGTCTGT-TCATGTCCGTCAGGGCTTGG-ACAGCGCTCGT-CGT-GTATCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-CGGCGTCTTCTTGCTG-GGGGGCGGCTCGCGCCCGCCGGAGGTTCAATC-AAA-CTC-TGTTTATTAGTGAAGTCCGAGT--AAAAATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTT--TGGGG-AGGGCCTGCGCGCCCGAAAAGCAGTGGCGGTCCCCGGGGATGTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAACCGATGGGCCCTGCCAAAA-CCCCCCATAAATCTCCATGA??????????????????????????????????????? [848] Cladonia_rangiformis_AF455172 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCCCA--GCGG-CAGCTGTC-GT-TCGAGTCTTTCCGGGCTCGA-TCGGCGGTCGT-CGT-GTTTCTCAACCCCATGTTTATCA-TAC-CTTCGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATACCGGCCCC-AGGC-TTCAGT-GCCTTGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TATTTA--AGTGATGTCCGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGAATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCATAGCTTGGTATTGGACTTTCGCGGGCCTTCTT------AGGGGGCTCGCGGGTCCGAAAAACAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAACATCATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAAACCCCCCAT-AATTTCAATGAA?????????????????????????????????????? [844] Cladonia_rangiformis_AF455234 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCGGGG-GG-CTAGCCCCCA--GCGG-CAGCTGTC-GT-TCGAGTCTTTCCGGGCTCGA-TCGGCGGTCGT-CGT-GTTTCTCAACCCCATGTTTATCA-TAC-CTTCGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATACCGGCCCC-AGGC-TTCAAT-GCCTTGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TATTTA--AGTGATGTCCGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCCTTCAAGCATAGCTTGGTATTGGACTTTCGCGGGCCTTCTT------AGGGGGCTCGCGGGTCCGAAAAACAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAACATCATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAAACCCCCCAT-AATTTCAATGAA?????????????????????????????????????? [841] Cladonia_cornuta_AF455196 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCGGGG-GGCCTAGCCCCCA--GCGG-CGAGTGTC-GT-TCGAGTCCCCCGGGACTTGG-CCGGCGGTCGT-CGT-GTTTCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTAAACCAAA-TCC-TATTTATCAGTGATGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACATTCGCGGGTCCTTTT-ATA----GGGGCTCGCGGGCCCGAAAAACAGTGGCGGTTCCCGAGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAATCGGTGGG-CTTGCCAAAA-CCCCCCAT-AATCTCCATGA??????????????????????????????????????? [843] Cladonia_cornuta_AF455197 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGTTCGGGG-GGCCTAGCCCCCA--GCGG-CGAGTGTC-GT-TCGAGTCCCCCGGGACTTGG-CCGGCGGTCGT-CGT-GTTTCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTAAACCAAA-TCC-TATTTATCAGTGATGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACATTCGCGGGCCCTTTT-ATA----GGGGCTCGCGGGCCCGAAAAACAGTGGCGGTTCCCGAGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAATCGGTGGG-CTTGCCAAAA-CCCCCCAT-AATCTCCATGA??????????????????????????????????????? [843] Cladonia_subulata_AF455180 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGGTGAGGGAGGCCCGCCCCTCC--GCGG-CGAGTGTC-GG-TCGAGTCCTTCCGGGCTCGG-TCGGCAGTCGT-CGT-GCTTCTCAACCCTATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGATCGCGCCCGCCGGAGGTTTAATC-AAA--CT-CTATTATCAGTGATGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT-ATAGGGAGGGGCTCGCGGATCCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAATCGATGGGTCCTGCCAAAA-CCCCCCAT-AATCTCCAAAAA?????????????????????????????????????? [847] Cladonia_subulata_AF455181 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TGAGGTGAGGGAGGCCCGCCCCTCC--GCGG-CGAGTGTC-GG-TCGAGTCCTTCCGGGCTCGG-TCGGCAGTCGT-CGT-GCTTCTCAACCCTATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGATCGCGCCCGCCGGAGGTTTAATC-AAA--CT-CTATTATCAGTGATGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT-ATAGGGAGGGGCTCGCGGATCCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAATCGATGGGTCCTGCCAAAA-CCCCCCAT-AATCTCCAAAAA?????????????????????????????????????? [847] Cladonia_caespiticia_228 ??????TACCGATGTCCTTAGCCAGCGACTCTAAAGAAATTAGCTATAGTCGCCCCTTCGGGGGTTGGCGACGCCATCAATCTGTGTCTGGGAGTGCTTTCCATCAGGGGAGCACCACCGGCAGCTCGTTGTATTTCGAGTTCACAGGTCAAACGATAGCGGCCGCTTCGGTGGTTGAGATATGATCGGCCTCCAGCTTTTACCTAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTAATGAGGCGAGGGAGGCCCACCCCCCC--GCGG-CGAGCGTC-GG-TCGAGTCCCTCCGGGCTCGG-CCGGTGGTCGT-CGT-GCTTCTCAACCCCACGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGTCGGCCCC-GGGC-TTCATT-GCCT-GGGGGCGGATCGCGCCCGCCAGAGGCCTAATC-AAA--CC-CTTTTATTAGTGATGTCTGAGT--AAATATTT-AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCCCTT-ATAGGGAGGGGCTTGTGGGTCCGAAAAGCAGTGGCGGTCCCCGAGGACTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAA-CCCCCCCAT-AATCTCCATAAATTGACCTCGGATCA???????????????????????? [849] Cladonia_caespiticia_AF455205 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A?TGAGGTGAGG?AGGCCCGCCCCTCC--GCGG-CGAGCGTC-GG-TCGAGTCCCTCCGGGCTCGG-CCGGTGGTCGT-CGT-GCTTCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-GGAA-TTCACT-GTCT-GGGGGCGGATCGCGCCCGCCAGAGGCCTAATC-AAA-TTC-TGTTTATTAGTGATGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTAGACTTTCGCGGGCTCTCTT-ATAAGGAGGGGCTCGCGGGTCCGAAAAGCAGTGGCGGTCCCCGAGGACTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAAA-CCCCCCAT-AATCTCCATAAA?????????????????????????????????????? [849] Cladonia_caespiticia_368 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTAATGAGGTGAGGGAGGCCCGCCCCTCC--GCGG-CGAGCGTC-GG-TCGAGTCCCTCCGGGCTAGG-CCGGTGGTCGT-CGT-GCTTCTCAACCCCATGTTTACCA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-GGAC-TTCACT-GTCT-GGGGGCGGATCGCGCCCGCCAGAGGCCTAATC-AAA-TTC-TGTTTATTAGTGATGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGACAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCCCTT-ATAGGGAGAGGTTTGCGGGTCCTAAAAGCAGTGGCGGTCCCCGAGGACTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCCAT-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [638] Cladonia_caespiticia_96 ???????????????????AG??AGCGACTCTAA?GAAATCTGCTATAGTCGCCCCTTCGGGGGC?GGCGACGCTACCAATCTGTGTCTGGGAGTGCTTTCCAACAGGGGGGCACTACCGGCAGCTCGTTGTATTTCGAGTTCACAGGTCAAACGATGGCGGCCACTTCGGTGGTTGAGATATGATCGGCCTCCAGTTGTTACCTAGCTGGAGAGATTTGTGGAACCTGCGGAAGGATCATTAATGAGGCGAGGGAGGCCCGCCCCTCC--GCGG-CGAGTATC-GG-TCGAGTCCCTCCGGGCTCGG-CCGGTGGTCGT-CGT-GCTTCTCAACCCCATGCTTACCA-TAC-CTTTGTTGCTTTGGCGGGTCTTGAGCAGGCTATACGGCTCATGCCGGCCCC-GGGC-TTCATT-GCCT-GGGGGCGGATCGCGCCCGCCAGAGGTCTAATC-AAA-TTCTTGTTTATGAGTGATGTCTGAGC--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCCCTT-ATAGGGAGAGGCTTGCGGGTCCTAAAAGCAGTGGCGGTCCCCGAGGACTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCCAT-AATCTCCATAAATTGACCTCGGATCA???????????????????????? [850] Cladonia_petrophila_358 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTT-AGGG-GGCCTAACCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGCCCCC-AGGC-AATAAA-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAA---TCAGTGATGTCTGAGC--AAATATTAAAAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCCTAGCTTGGTATTGGACTTTCGCGGGCTCTCTT----ACAGG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCC--T-AACCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_37 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTT-AGGG-GGCCTAACCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGCCCCC-AGGC-AATAAA-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAA---TCAGTGATGTCTGAGC--AAATATTAAAAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCCTAGCTTGGTATTGGACTTTCGCGGGCTCTCTT----ACAGG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCC--T-AACCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_407 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTT-AGGG-GGCCTAACCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGCCCCC-AGGC-AATAAA-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAA---TCAGTGATGTCTGAGC--AAATATTAAAAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCCTAGCTTGGTATTGGACTTTCGCGGGCTCTCTT----ACAGG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCC--T-AACCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_AF455222 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A?TGAGTTCGGGG-GG?CTAGCCCCCA--GCGG-CGGGTGTC-GT?TCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCCTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAGG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCC--T-AACCTCCATAAA?????????????????????????????????????? [845] Cladonia_petrophila_366 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-AGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TAATTATCAGTGATGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTTTTGAATTTTCGCGGGCCCCTTT---CACAAG-GGCTTGCGGGTTCGAAAAGCAGTGGCGGTCCCCGATGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGTGTCTTGCCAAAT-CCCC---T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_369 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCAA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TAATTATCAGTGATGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTTTTGAATTTTCGCGGGCCCCTTT---CACAAG-GGCTTGCGGGTTCGAAAAGCAGTGGCGGTCCCCGATGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGTGTCTTGCCAAAT-CCCC---T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_38 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-AGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TTC-TAATTATCAGTGATGTCTGAGT--AAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTTTTGAATTTTCGCGGGCCCCTTT---CACAAG-GGCTTGCGGGTTCGAAAAGCAGTGGCGGTCCCCGATGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGTGTCTTGCCAAAT-CCCC---T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [633] Cladonia_petrophila_404 TTTC?GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTTGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTTCATTTGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTACCTTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCTCGCCAGAGGTTTATTC-AAA-TCC-TAGTTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTTGCGGGTTCGAAAAGCAGAGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCTCC--T-CATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [634] Cladonia_petrophila_405 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACTTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCTTGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGCAGGCTATACGGCTCATGCCAGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAATTATGAGTGATGTCTGAGC--AAATATT--AAATAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGAATTTTCGCGGGCCCCTTT---CTCAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAT-CCCC---T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_petrophila_370 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGATCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCAGCCCCCAGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTTGCGGGTTCGAAAAGCAGAGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGCCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_petrophila_371 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGATCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCAGCCCCCAGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTTGCGGGTTCGAAAAGCAGAGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGCCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_petrophila_372 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGATCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCAGCCCCCAGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATTC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTTGCGGGTTCGAAAAGCAGAGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGCCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_petrophila_406 TTTC?GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCAGCCCC-AGGC-TTTATT-GCCT-GGGGGCGGCTCGCGCCCGCCAGAGGTTTATTC-AAAATGC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGAGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGGCCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [634] Cladonia_apodocarpa_AF455237 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A?TGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAA?TCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-T-AATCTCCATAAA?????????????????????????????????????? [846] Cladonia_apodocarpa_373 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAAATCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_apodocarpa_374 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAAATCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-A-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_apodocarpa_377 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAAATCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_apodocarpa_378 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAAATCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_apodocarpa_379 TTTCCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTGGCCCCCA--GCGG-CGGGTGTC-GTATCAAGTCCATTCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTACTAC-TTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCTGGCCCC-AAGC-TTTATT-GCCT-GGGGGCGGCTCGCGTCCGCCAGAGGTTTATTC-AAAATCC-TAATTATCAGTGATGTCTGAGC--AAATATT--AAATAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAG-GGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAGTTTTATCCCGCGTTGGAAAGAATCGATGGGTCTTGCCAAAA-CCCCCC-T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA [635] Cladonia_stipitata_360 TTTGCCTACCGAAGCCCCTAGCCAGCGACTCTAAAGAAATCAGCTATAGTCGCCCCCCCGGGGGCCGGCGACGCCATCAATCTGTGTCTGGGAGTGCTCCCCTTAAGGGGAGTGCCACCGGCAGCTCGTT-TGCTTCGAGTTCACAGGTCAAACGATAGCGGCCACTTCGGTGGTTGAGATATGATCGGCCCCCAGCTATCATCCAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATCCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCT-AGGC-TTCACT-GCCT-GGGGGGGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCC-TAATTATCAGTGATGTCTGAGCGCGAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAGGGGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCA???????????????????????? [845] Cladonia_stipitata_400 ???????????????????AG?C?G???C?C?-AA????TCAGCTATAGTCGCCCCCCCGGGGGCCGGCGACGCCATCAATCTGTGTCTGGGAGTGCTCCCCTTAAGGGGAGTGCCACCGGCAGCTCGTT-TGCTTCGAGTTCACAGGTCAAACGATAGCGGCCACTTCGGTGGTTGAGATATGATCGGCCCCCAGCTATCATCCAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATCCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTCACT-GCCT-GGGGGGGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCC-TAATTATCAGTGATGTCTGAGCGCGAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAGGGGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAA--CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGAT??????????????? [843] Cladonia_stipitata_401 ????????????AGCCCCTAGCCAGCGACTCT-AAGAAATCAGCTATAGTCGCCCCCCCGGGGGCCGGCGACGCCATCAATCTGTGTCTGGGAGTGCTCCCCTTAAGGGGAGTGCCACCGGCAGCTCGTT-TTCTTCGAGTTCACAGGTCAAACGATAGCGGCCACTTCGGTGGTTGAGATATGATCGGCCCCCAGCTATCATCCAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATCCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTCACT-GCCT-GGGGGGGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCC-TAATTATCAGTGATGTCTGAGCGCGAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAGGGGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATC????????????????????????? [844] Cladonia_stipitata_402 ?????????????????CTA????G?GA?TCT?AAGAAATCAGCTATAGTCGCCCCCCCGGGGGCCGGCGACGCCATCAATCTGTGTCTGGGAGTGCTCCCCTTAAGGGGAGTGCCACCGGCAGCTCGTT-TGCTTCGAGTTCACAGGTCAAACGATAGCGGCCACTTCGGTGGTTGAGATATGATCGGCCCCCAGCTATCATCCAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATCCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTACACGGCTCATGCCGGCCCC-AGGC-TTCACT-GCCT-GGGGGGGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCC-TAATTATCAGTGATGTCTGAGCGCGAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAGGGGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATC????????????????????????? [845] Cladonia_stipitata_403 ????????????AGCCCCTAGCCAGCGACTCT-AAGAAATCAGCTATAGTCGCCCCCCCGGGGGCCGGCGACGCCATCAATCTGTGTCTGGGAGTGCTCCCCTTAAGGGGAGTGCCACCGGCAGCTCGTT-TGCTTCGAGTTCACAGGTCAAACGATAGCGGCCACTTCGGTGGTTGAGATATGATCGGCCCCCAGCTATCATCCAGCTGGGGAGATTTGCGGAACCTGCGGAAGGATCATTATTGAGTTCGGGG--GCCTAGCCCCCA--GCGG-CGGGTGTC-GTATCGAGTCCATCCGGGCTCGAGCCGGCATTCGT-CGT-GTCTCTCAACCCCATGTTTACTA-TAC-CTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCC-AGGC-TTCACT-GCCT-GGGGGGGGCTCGCGCCCGCCAGAGGTTTATTC-AAA-TCC-TAATTATCAGTGATGTCTGAGCGCGAATATT--AAATAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACTTTCGCGGGCCCTCTT----ACAAGGGGCTCGCGGGTTCGAAAAGCAGTGGCGGTCCCCGAGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAATCGATGGATCTTGCCAAAA-CCCCC--T-AATCTCCATAAATTGACCTCGGATCAGGTAGGGAT??????????????? [844] [ ambiguous region ] [ 12345 ] Cladonia_arbuscula_AF458292 55FF1 Cladonia_arbuscula_AF458291 44LD1 Cladonia_arbuscula_AF458293 44L91 Cladonia_arbuscula_AF458309 54J91 Cladonia_subtenuis_AF457911 22EF6 Cladonia_subtenuis_AF457912 23DF6 Cladonia_floerkeana_AF453697 317H4 Cladonia_floerkeana_AF453698 317E4 Cladonia_rangiformis_AF455172 ?8K30 Cladonia_rangiformis_AF455234 66K30 Cladonia_cornuta_AF455196 7BB73 Cladonia_cornuta_AF455197 7BB73 Cladonia_subulata_AF455180 1B663 Cladonia_subulata_AF455181 1B663 Cladonia_caespiticia_228 09569 Cladonia_caespiticia_AF455205 ?7M43 Cladonia_caespiticia_368 17M53 Cladonia_caespiticia_96 09P53 Cladonia_petrophila_358 30227 Cladonia_petrophila_37 30227 Cladonia_petrophila_407 30227 Cladonia_petrophila_AF455222 ?BH27 Cladonia_petrophila_366 5BH8D Cladonia_petrophila_369 5BH8D Cladonia_petrophila_38 5BH8D Cladonia_petrophila_404 8B908 Cladonia_petrophila_405 5B4BD Cladonia_petrophila_370 5B307 Cladonia_petrophila_371 5B307 Cladonia_petrophila_372 5B307 Cladonia_petrophila_406 5B107 Cladonia_apodocarpa_AF455237 5B?05 Cladonia_apodocarpa_373 5B005 Cladonia_apodocarpa_374 5B002 Cladonia_apodocarpa_377 5B005 Cladonia_apodocarpa_378 5B005 Cladonia_apodocarpa_379 5B005 Cladonia_stipitata_360 57817 Cladonia_stipitata_400 5781B Cladonia_stipitata_401 57817 Cladonia_stipitata_402 57817 Cladonia_stipitata_403 57817 ; END; [ BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-874; CODESET * UNTITLED = Universal: all ; END; ] BEGIN ASSUMPTIONS; USERTYPE ITS1 STEPMATRIX = 5 A C G T - [A] . 2.44 1.75 2.29 3.54 [C] 2.44 . 2.85 1.00 2.98 [G] 1.75 2.85 . 2.73 3.83 [T] 2.29 1.00 2.73 . 3.14 [-] 3.54 2.98 3.83 3.14 . ; USERTYPE 58S STEPMATRIX = 5 A C G T - [A] . 2.30 1.20 2.30 3.30 [C] 2.30 . 3.30 0.69 3.30 [G] 1.20 3.30 . 3.30 3.30 [T] 2.30 0.69 3.30 . 3.30 [-] 3.30 3.30 3.30 3.30 . ; USERTYPE ITS2 STEPMATRIX = 5 A C G T - [A] . 2.72 1.47 2.16 5.11 [C] 2.72 . 3.01 0.93 4.11 [G] 1.47 3.01 . 2.16 5.11 [T] 2.16 0.93 2.16 . 4.11 [-] 5.11 4.11 5.11 4.11 . ; USERTYPE Region#1 STEPMATRIX = 9 [ 0 = GCGAGGGAGGC] [ 1 = GTGAGGGAGGC] [ 2 = TGCGGGGGC] [ 3 = TTAGGGGGC] [ 4 = TTCAGGGGC] [ 5 = TTCGGGGGC] [ 6 = TTCGGGGGG] [ 7 = TTCGGGGGGC] [ 8 = TTTGGGGGC] 0 1 2 3 4 5 6 7 8 [0] . 1.0 3.0 4.0 4.0 4.0 5.0 4.0 3.0 [1] 1.0 . 3.0 3.0 3.0 4.0 5.0 4.0 4.0 [2] 3.0 3.0 . 2.0 2.0 1.0 2.0 2.0 2.0 [3] 4.0 3.0 2.0 . 2.0 1.0 2.0 2.0 1.0 [4] 4.0 3.0 2.0 2.0 . 1.0 2.0 2.0 2.0 [5] 4.0 4.0 1.0 1.0 1.0 . 1.0 1.0 1.0 [6] 5.0 5.0 2.0 2.0 2.0 1.0 . 1.0 2.0 [7] 4.0 4.0 2.0 2.0 2.0 1.0 1.0 . 2.0 [8] 3.0 4.0 2.0 1.0 2.0 1.0 2.0 2.0 . ; USERTYPE Region#2 STEPMATRIX = 11 [ 0 = AATAAA] [ 1 = GTCTTCTT] [ 2 = GTTCCCT] [ 3 = GTTTCCT] [ 4 = GTTTTCT] [ 5 = GTTTTTC] [ 6 = TTCAAT] [ 7 = TTCACT] [ 8 = TTCAGT] [ 9 = TTCATT] [ B = TTTATT] 0 1 2 3 4 5 6 7 8 9 B [0] . 5.0 5.0 5.0 5.0 5.0 2.0 3.0 3.0 3.0 3.0 [1] 5.0 . 3.0 2.0 2.0 3.0 3.0 3.0 3.0 2.0 3.0 [2] 5.0 3.0 . 1.0 2.0 2.0 3.0 2.0 3.0 3.0 4.0 [3] 5.0 2.0 1.0 . 1.0 2.0 3.0 2.0 3.0 3.0 3.0 [4] 5.0 2.0 2.0 1.0 . 2.0 2.0 2.0 2.0 2.0 3.0 [5] 5.0 3.0 2.0 2.0 2.0 . 2.0 2.0 2.0 2.0 3.0 [6] 2.0 3.0 3.0 3.0 2.0 2.0 . 1.0 1.0 1.0 2.0 [7] 3.0 3.0 2.0 2.0 2.0 2.0 1.0 . 1.0 1.0 2.0 [8] 3.0 3.0 3.0 3.0 2.0 2.0 1.0 1.0 . 1.0 2.0 [9] 3.0 2.0 3.0 3.0 2.0 2.0 1.0 1.0 1.0 . 1.0 [B] 3.0 3.0 4.0 3.0 3.0 3.0 2.0 2.0 2.0 1.0 . ; USERTYPE Region#3 STEPMATRIX = 20 [ 0 = ATCCTAATTATC] [ 1 = ATGCTAATTATC] [ 2 = ATTCTAATC] [ 3 = ATTCTAATTATC] [ 4 = ATTCTAATTATG] [ 5 = CCCTTTTATT] [ 6 = CTCTATTATC] [ 7 = CTCTGTTTATT] [ 8 = TCCTAATTATC] [ 9 = TCCTAGTTATC] [ B = TCCTATTTATC] [ D = TCTGATTTATC] [ E = TCTGGTTTATC] [ F = TTCCATTTATT] [ H = TTCTAATTATC] [ J = TTCTATCTATT] [ K = TTCTATTTA] [ L = TTCTATTTATT] [ M = TTCTGTTTATT] [ P = TTCTTGTTTATG] 0 1 2 3 4 5 6 7 8 9 B D E F H J K L M P [0] . 1.0 2.0 1.0 2.0 4.0 3.0 5.0 1.0 2.0 2.0 4.0 5.0 4.0 2.0 5.0 4.0 4.0 5.0 5.0 [1] 1.0 . 2.0 1.0 2.0 4.0 3.0 5.0 2.0 3.0 3.0 4.0 5.0 3.0 2.0 5.0 4.0 4.0 5.0 6.0 [2] 2.0 2.0 . 1.0 2.0 2.0 3.0 2.0 3.0 3.0 3.0 3.0 3.0 4.0 2.0 3.0 3.0 3.0 4.0 4.0 [3] 1.0 1.0 1.0 . 1.0 4.0 3.0 5.0 2.0 3.0 3.0 3.0 4.0 4.0 1.0 4.0 3.0 3.0 4.0 5.0 [4] 2.0 2.0 2.0 1.0 . 4.0 4.0 5.0 3.0 4.0 4.0 4.0 5.0 4.0 2.0 4.0 3.0 3.0 4.0 4.0 [5] 4.0 4.0 2.0 4.0 4.0 . 3.0 2.0 4.0 4.0 3.0 4.0 4.0 3.0 3.0 3.0 3.0 3.0 3.0 4.0 [6] 3.0 3.0 3.0 3.0 4.0 3.0 . 3.0 3.0 3.0 3.0 3.0 3.0 4.0 2.0 3.0 3.0 3.0 4.0 4.0 [7] 5.0 5.0 2.0 5.0 5.0 2.0 3.0 . 5.0 5.0 4.0 3.0 3.0 3.0 4.0 3.0 3.0 2.0 1.0 3.0 [8] 1.0 2.0 3.0 2.0 3.0 4.0 3.0 5.0 . 1.0 1.0 3.0 4.0 4.0 1.0 4.0 3.0 3.0 4.0 5.0 [9] 2.0 3.0 3.0 3.0 4.0 4.0 3.0 5.0 1.0 . 1.0 3.0 3.0 4.0 2.0 4.0 3.0 3.0 4.0 4.0 [B] 2.0 3.0 3.0 3.0 4.0 3.0 3.0 4.0 1.0 1.0 . 2.0 3.0 3.0 2.0 3.0 2.0 2.0 3.0 4.0 [D] 4.0 4.0 3.0 3.0 4.0 4.0 3.0 3.0 3.0 3.0 2.0 . 1.0 3.0 3.0 4.0 3.0 3.0 3.0 4.0 [E] 5.0 5.0 3.0 4.0 5.0 4.0 3.0 3.0 4.0 3.0 3.0 1.0 . 4.0 3.0 3.0 4.0 4.0 3.0 3.0 [F] 4.0 3.0 4.0 4.0 4.0 3.0 4.0 3.0 4.0 4.0 3.0 3.0 4.0 . 3.0 2.0 2.0 1.0 2.0 4.0 [H] 2.0 2.0 2.0 1.0 2.0 3.0 2.0 4.0 1.0 2.0 2.0 3.0 3.0 3.0 . 3.0 2.0 2.0 3.0 4.0 [J] 5.0 5.0 3.0 4.0 4.0 3.0 3.0 3.0 4.0 4.0 3.0 4.0 3.0 2.0 3.0 . 2.0 1.0 2.0 4.0 [K] 4.0 4.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.0 3.0 4.0 2.0 2.0 2.0 . 1.0 2.0 3.0 [L] 4.0 4.0 3.0 3.0 3.0 3.0 3.0 2.0 3.0 3.0 2.0 3.0 4.0 1.0 2.0 1.0 1.0 . 1.0 3.0 [M] 5.0 5.0 4.0 4.0 4.0 3.0 4.0 1.0 4.0 4.0 3.0 3.0 3.0 2.0 3.0 2.0 2.0 1.0 . 2.0 [P] 5.0 6.0 4.0 5.0 4.0 4.0 4.0 3.0 5.0 4.0 4.0 4.0 3.0 4.0 4.0 4.0 3.0 3.0 2.0 . ; USERTYPE Region#4 STEPMATRIX = 15 [ 0 = TTACAAGGG] [ 1 = TTACAAGGGG] [ 2 = TTACAGGGG] [ 3 = TTAGGGGG] [ 4 = TTATAAGGAGGGG] [ 5 = TTATAGGGAGAGG] [ 6 = TTATAGGGAGGGG] [ 7 = TTATAGGGG] [ 8 = TTCACAAGGG] [ 9 = TTCAGGGGG] [ B = TTCTCAAGGG] [ D = TTTAGGGGG] [ E = TTTGGGGAGGG] [ F = TTTGGGGGG] [ H = TTTGGGGGGG] 0 1 2 3 4 5 6 7 8 9 B D E F H [0] . 1.0 1.0 2.0 2.0 3.0 3.0 2.0 1.0 3.0 2.0 3.0 3.0 3.0 3.0 [1] 1.0 . 1.0 2.0 2.0 3.0 2.0 2.0 2.0 2.0 3.0 3.0 2.0 3.0 3.0 [2] 1.0 1.0 . 2.0 2.0 2.0 2.0 1.0 2.0 2.0 3.0 3.0 2.0 3.0 3.0 [3] 2.0 2.0 2.0 . 2.0 2.0 2.0 2.0 2.0 1.0 2.0 1.0 2.0 2.0 2.0 [4] 2.0 2.0 2.0 2.0 . 2.0 1.0 1.0 3.0 3.0 3.0 3.0 4.0 3.0 3.0 [5] 3.0 3.0 2.0 2.0 2.0 . 1.0 1.0 4.0 3.0 4.0 2.0 3.0 4.0 4.0 [6] 3.0 2.0 2.0 2.0 1.0 1.0 . 1.0 4.0 3.0 4.0 2.0 3.0 3.0 3.0 [7] 2.0 2.0 1.0 2.0 1.0 1.0 1.0 . 3.0 3.0 3.0 2.0 3.0 3.0 3.0 [8] 1.0 2.0 2.0 2.0 3.0 4.0 4.0 3.0 . 2.0 1.0 3.0 3.0 3.0 3.0 [9] 3.0 2.0 2.0 1.0 3.0 3.0 3.0 3.0 2.0 . 2.0 1.0 4.0 2.0 3.0 [B] 2.0 3.0 3.0 2.0 3.0 4.0 4.0 3.0 1.0 2.0 . 3.0 4.0 4.0 4.0 [D] 3.0 3.0 3.0 1.0 3.0 2.0 2.0 2.0 3.0 1.0 3.0 . 2.0 1.0 2.0 [E] 3.0 2.0 2.0 2.0 4.0 3.0 3.0 3.0 3.0 4.0 4.0 2.0 . 1.0 1.0 [F] 3.0 3.0 3.0 2.0 3.0 4.0 3.0 3.0 3.0 2.0 4.0 1.0 1.0 . 1.0 [H] 3.0 3.0 3.0 2.0 3.0 4.0 3.0 3.0 3.0 3.0 4.0 2.0 1.0 1.0 . ; USERTYPE Region#5 STEPMATRIX = 12 [ 0 = AAAACCCCCCATAA] [ 1 = AAACACCATAAA] [ 2 = AAACCCCCCAAA] [ 3 = AAACCCCCCATAA] [ 4 = AAACCCCCCATAAA] [ 5 = AAACCCCCCTAA] [ 6 = AAACCCCCCTAAA] [ 7 = AAACCCCCTAA] [ 8 = AAACCTCCTCA] [ 9 = AACCCCCCCATAA] [ B = AACCCCCTAA] [ D = AATCCCCTAA] 0 1 2 3 4 5 6 7 8 9 B D [0] . 3.0 2.0 1.0 2.0 2.0 3.0 2.0 4.0 2.0 2.0 3.0 [1] 3.0 . 3.0 3.0 2.0 4.0 3.0 3.0 3.0 4.0 4.0 4.0 [2] 2.0 3.0 . 1.0 1.0 1.0 1.0 2.0 3.0 2.0 2.0 3.0 [3] 1.0 3.0 1.0 . 1.0 1.0 2.0 1.0 3.0 1.0 2.0 2.0 [4] 2.0 2.0 1.0 1.0 . 2.0 1.0 2.0 3.0 2.0 3.0 3.0 [5] 2.0 4.0 1.0 1.0 2.0 . 1.0 1.0 3.0 2.0 1.0 2.0 [6] 3.0 3.0 1.0 2.0 1.0 1.0 . 2.0 3.0 3.0 2.0 3.0 [7] 2.0 3.0 2.0 1.0 2.0 1.0 2.0 . 2.0 2.0 1.0 2.0 [8] 4.0 3.0 3.0 3.0 3.0 3.0 3.0 2.0 . 4.0 3.0 3.0 [9] 2.0 4.0 2.0 1.0 2.0 2.0 3.0 2.0 4.0 . 1.0 2.0 [B] 2.0 4.0 2.0 2.0 3.0 1.0 2.0 1.0 3.0 1.0 . 1.0 [D] 3.0 4.0 3.0 2.0 3.0 2.0 3.0 2.0 3.0 2.0 1.0 . ; [OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ;] EXSET * UNTITLED = 1-244 249-259 353 410-417 459-471 505 708-721 812-826 834-874 constant; TypeSet * ITS = ITS1:245-509, 58S:510-661, ITS2:662-833, Region#1:875, Region#2:876, Region#3:877, Region#4:878, Region#5:879; END;