Moore, J. E., T.M. Cox, R.L. Lewison, A.J. Read, R. Bjorkland, S.L. McDonald, L.B. Crowder, E. Aruna, I. Ayissi, P. Espeut, C. Joynson-Hicks, N. Pilcher, C. Poonian, B. Solarin, and J. Kiszka. An interview-based approach for triaging marine mammal and sea turtle captures in artisanal fisheries. Submitted to Biological Conservation.
Moore, J. E., C. U. Soykan, R. Zydelis, S. L. McDonald, R. L. Lewison, and L. B. Crowder. Quantitative evaluation of fisheries bycatch risk for marine mammals and seabirds . Submitted to Conservation Biology.
Peer-reviewed publications in print or in press
Moore, J. E., B. Wallace, R. Lewison, R. Zydelis, T. Cox, L. Crowder. 2009. A review of marine mammal, sea turtle and seabird bycatch in USA fisheries and the role of policy in shaping management. Marine Policy 33:435-451. pdf .
Bryant, J.P., T.P. Clausen, R.K. Swihart ... J.E. Moore, et al. (21 authors). 2009. Fire drives transcontinental variation in tree birch defense against browsing by snowshoe hares. American Naturalist 174:13-23. pdf .
Rizkalla, C., J. E. Moore, and R. K. Swihart. 2009. Modeling patch occupancy: relative performance of ecologically scaled landscape indices. Landscape Ecology 24:77-88. pdf .
Poonian, C. N. S., M. D. Hauzer, A. B. Allaoui, T. M. Cox, J. E. Moore, A. J. Read, R. L. Lewison, and L. B. Crowder. 2008. Rapid assessment of sea turtle and marine mammal bycatch in the Union of the Comoros. WIOMSA Journal 7:207-216. pdf
Moore, J. E., and A. J. Read. 2008. A Bayesian uncertainty analysis of cetacean demography and bycatch mortality using age-at-death data. Ecological Applications 18:1914-1931. pdf
Soykan, C. U., J. E. Moore, R. Zydelis, R. L. Lewison, L. B. Crowder, and C. Safina. 2008. Why study bycatch? An introduction to the Theme Section on fisheries bycatch. Endangered Species Research 5:91-102. pdf
Moore, J. E., and R. Zydelis. 2008. Quantifying seabird bycatch: where do we go from here? Animal Conservation 11:257-259. pdf
Eckert, S.A, J. E. Moore, D. D. Dunn, R. Sagarminaga, K. L. Eckert, P. N. Halpin. 2008. Hierarchical state-space models of loggerhead turtle movement behavior in relation to turtle size and oceanographic features. Ecological Applications 18:290-308. pdf, Code Supplement 1, Code Supplement 2, Appendices A and B (appendices erroneously not printed in original publication)
Moore, J. E., and R. K. Swihart. 2008. Factors affecting the relationship between seed removal and seed mortality. Canadian Journal of Zoology 86:378-385. pdf
Moore, J. E., A. B. McEuen, R. K. Swihart, T. A. Contreras, and M. A. Steele. 2007. Determinants of seed-removal distance by scatter-hoarding rodents in deciduous forests. Ecology 88:2529-2540. pdf
Moore, J. E., and R. K. Swihart. 2007. Toward ecologically explicit null models of nestedness. Oecologia 152:763-777. pdf , Code Supplement (not included in original publication)
Moore, J. E., and R. K. Swihart. 2007. Importance of fragmentation-tolerant species as seed dispersers in disturbed landscapes. Oecologia 151:663-674. pdf
Lee, D. E., J. M. Black, J. E. Moore, and J. S. Sedinger. 2007. Age-specific stopover ecology of black brant at Humboldt Bay, California. Wilson Journal of Ornithology 119:9-22. pdf
Moore, J. E. and J. M. Black. 2006. Slave to the tides: spatio-temporal foraging dynamics of spring staging black brant. Condor 108:661-677. pdf
Moore, J. E. and R. K. Swihart. 2006. Diet choice of captive Blue Jays: implications for tree dispersal. Condor 108:377-388. pdf
Swihart, R. K., J. J. Lusk, J. E. Duchamp, C. E. Rizkalla, and J. E. Moore. 2006. The roles of landscape context, niche breadth, and range boundaries in predicting species responses to habitat alteration. Diversity and Distributions 12:277-287. pdf
Moore, J. E., and J. M. Black. 2006. Historical changes in black brant use on Humboldt Bay, California. Wildlife Biology 12:151-162. pdf
Moore, J. E., and R. K. Swihart. 2005. Modeling patch occupancy by forest rodents: incorporating detectability and spatial autocorrelation with hierarchically structured data. Journal of Wildlife Management 69:933-949. pdf
Moore, J. E., M. A. Colwell, R. M. Mathis, and J. M. Black 2004. Staging of Pacific flyway brant in relation to eelgrass abundance and site isolation, with special consideration of Humboldt Bay, California. Biological Conservation 115:475-486. pdf
Moore, J. E., Scheiman, D. M. and R. K. Swihart 2004. Field comparison of removal and modified double-observer modeling for estimating detectability and abundance of birds. Auk 121:865-876. pdf
Moore, J.E. and P. V. Switzer. 1998. Pre-roosting aggregations in the American Crow Corvus brachyrhyncos. Canadian Journal of Zoology 76:508-512. pdf
Books and book chapters
Moore, J. E. and R. E. Russell. 2004. Empirical considerations for modeling animal movements in human-dominated landscapes. Pages 165-180 in R.K. Swihart and J.E. Moore, editors. Conserving Biodiversity in Agricultural Landscapes: Model-Based Planning Tools. Purdue University Press, West Lafayette, IN.
Russell, R. E., J. E. Moore, M. S. Miller, T. M. Sutton, and S. M. Knapp. 2004. Selecting surrogate species for ecological assessments in land-use planning: a case study in the Upper Wabash River Basin. Pages 181-213 in R.K. Swihart and J.E. Moore, editors. Conserving Biodiversity in Agricultural Landscapes: Model-Based Planning Tools. Purdue University Press, West Lafayette, IN.
Swihart, R. K. and J. E. Moore. 2004. Conserving Biodiversity in Agricultural Landscapes: Model-Based Planning Tools. Purdue University Press, West Lafayette, IN.
See review of our book in Landscape Ecology
