Cladogram of tree built using protml on protein sequencs for a random sampling of best-mutual protein-coding genes. Rooted with A.thaliana. Several species are left off of this tree including C.albicans for technical reasons.

Tree built using protml on the protein sequences for a random sampling of best-mutual protein coding gene orthologs for all the fungal genomes. Genomes with unpublished annotations were prepared with SNAP (Korf 2004). Rooted with Encephalitozoon cuniculi

Updated Tree

An updated tree built with 100 randomly selected proteins which are best-mutual orthologs. Added C.immitis and full species names. Branch lengths are undoubtably inflated as this is an automated analysis.

Updated Tree with Bootstrap (-RX from protml)

15 species tree with Human and Arabidopsis as outgroup

15 species with H.sapiens and A.thaliana as outgroup instead of E.cuniculi using 50 randomly selected proteins which are best-mutual orthologs. ML tree constructed with protml. These represent the genomes with available genome annotations either published or available from genome center sites ommitting P.chrysosporium and C.albicans.