DUKE UNIVERSITY

Sina Farsiu Farsio Duke Ophthalmology Image Preocessing superresolution

  Sina Farsiu, Ph.D.
Assistant Professor
Department of Ophthalmology

Department of Biomedical Engineering

Fitzpatrick Institute for Photonics




Mailing Address: BOX 3802, DUMC, Durham, NC, 27710
Office:Room 4008, AERI Building
Phone :919-684-6642
Fax:919-684-8983
Email: "MY FIRST NAME" DOT "MY LAST NAME" AT duke DOT edu

Publications| Collaborators| Available Positions| Teaching

I am an assistant professor in the departments of Ophthalmology and Biomedical Engineering (secondary appointment) and a faculty member of Fitzpatrick Institute for Photonics. Before this, I was a postdoctoral member of the Duke Advanced Research in SDOCT Imaging (DARSI) Laboratory at the Ophthalmology Department, and  the Laboratory for Biophotonics at the BioMedical Engineering Department (supported in part by a North Carolina Biotechnology Center grant).   I spent six years in the beautiful Santa Cruz, first as a PhD student of the Multi-Dimensional Signal Processing (MDSP) research group (supported in part by a fellowship from the Center for Adaptive Optics) and then as a postdoctoral scholar (supported in part from a DARPA/AFOSR grant) at the Electrical Engineering Department of UCSC.  

For some strange reasons my research interest is in information processing. More specifically, my main areas of research are ophthalmic imaging and image processing, segmentation, super-resolution, demosaicing/deblurring/denoising, motion estimation, adaptive sampling, sensor fusion, photonic imaging through scattering media, optical coherence tomography (OCT), and X-ray imaging.

At the ophthalmology department, I am the director of the Vision and Image Processing (VIP) Laboratory. Along with my colleagues, we investigate how to improve early diagnostic methods, and find new imaging biomarkers for both age-related macular degeneration (AMD) and for retinal diseases in children. On another front, we study efficient signal processing based methods to overcome the theoretical and practical limitations that constrain the achievable resolution of any imaging device. Our approach which is based on adaptive extraction and robust fusion of relevant information from the expensive and sophisticated as well as simple and cheap sensors, has found wide applications in improving the quality of imaging systems such as ophthalmic SDOCT, digital X-ray mammography, electronic and optical microscopes, and commercial digital camcorders.

When I'm not busy developing a mathematical model of the procrastination theory, I'm a reviewer for IEEE Transactions on Image Processing, IEEE Transactions on Signal Processing, IEEE Transactions on Pattern Analysis and Machine Intelligence, IEEE Transactions on Circuits and Systems for Video Technology, IEEE Transactions on Circuits and Systems, IEEE Transactions on Multimedia, IEEE Signal Processing Letters, IEEE Computer Graphics and Applications, IEEE Journal of Selected Topics in Signal Processing, Image and Vision Computing Journal, Signal Image and Video Processing, EURASIP Journal on Applied Signal Processing, Signal Processing: Image Communication Journal, International Journal of Wavelets  Multiresolution and Information Processing, Journal of Electronic Imaging, Applied Optics, Optical Engineering, British Journal of Ophthalmology, and related conferences.

Feel free to send me an email if you have questions about my research/publications.

 

AVAILABLE POSITIONS:

There are openings for postdocs and exceptional graduate/undergraduate students (BME, EE, CE, or CS).

POSTDOCTORAL Research Associate Position (Updated 10/10/2009, available immediately): Funding available for two years, with the initial appointment for one year with the possibility of a multi-year extension pending the work progress. Successful candidates will collaborate with me and senior professors in the departments of Ophthalmology, Duke Reading Center, and BME on a project mainly focused on detection and segmentation of pathological features in ophthalmic specatral domain optical coherence tomography (SD-OCT) images.  No previous experience in ophthalmic sciences is necessary. The postdoc applicant must have peer-reviewed publications in the high impact computer vision and/or image processing journals (TIP, PAMI, TMI, OE, etc). Aside from the theoretical work, these projects involve software development and the applicant must be fluent in at least one programming language. If interested, the postdoc will collaborate and learn about desiging photonics imaging systems. If interested please send me your CV via email in the PDF format.

Undergraduate/Graduate Student: Duke students interested in image processing/ophthalmology related projects can contact me directly via email or drop by my office.

Graduate Student (filled):Thanks to a Knights Templar Eye Foundation, Inc. Pediatric Ophthalmology Research Grant there is funding available for (currently) one year support of a graduate student to work on an ophthalmic image fusion and enhancement problem. Current Duke students  of all disciplines who have  background in image processing and are fluent in at least one programming language are encouraged to contact me directly. Support for more than one year is possible but not guaranteed.

 Graduate Students (Fall-2010 admission): Please send me an email with your detailed CV (only PDF files are accepted). Unfortunately, currently I cannot guarantee financial aide for "International" students.

Duke's 3rd Year Medical Students: Medical students interested in participating in ophthalmic imaging research projects related projects may contact me directly. Please call or send me an email with your detailed CV

POSTDOCTORAL Research Associate Positions (ongoing search): Postdoctoal positions are occasionally available.  Successful candidates will collaborate with me and senior professors in the departments of  BME and Ophthalmology on projects that  are mainly focused on detection and segmentation of pathological features in ophthalmic images and/or adaptive ophthalmic imaging and image reconstruction.  No previous experience in ophthalmic sciences is necessary. The postdoc applicant must have peer-reviewed publications in the high impact computer vision and/or image processing journals (TIP, PAMI, TMI, etc). Aside from the theoretical work, these projects involve software development and the applicant must be fluent in at least one programming language. If interested please send me your CV via email, and I will inform you when an appropriate position becomes availble.


* Please send me links to files instead of attachments (especially if they are in any format but PDF), since I usually ignore emails with attachments. Also, please do not send me emails in any language but English or Gathic Avestan.

*If you don't receive an email reply in 7 days: My apologies, it might be deleted by the SPAM filter. Feel free to call me instead.

*Here is a picture of me from the good old days in Santa Cruz, and a photo few month after joining Duke.
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